Protein ZmABI43 | |
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Information | |
TF Name: | ZmABI43 |
Species: | Maize |
TF Family: | ABI3-VP1 |
Gene Name(Synonym): | ABI43 |
Uniprot ID: | K7VPP2 |
Subgenome: | 2 |
ZmABI43 is a protein in the ABI3-VP1 family.
Overview of domains present in v5 transcripts | |
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PF02362 | |
Zm00001eb401610_T001 |
Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
---|---|---|---|---|---|
Zm00001d048244 | DAPseq | sequence | fimo | position | |
Zm00001d048244 | DAPseq | sequence | fimo | position | |
Zm00001d048244 | ChIPseq | sequence | fimo | position | |
Zm00001d048244 | PChIPseq | sequence | fimo | position |
MKARLEATRKAEELESELDHEIPSFVKAMLHSHVVRGFWLQLPSHFCDTYMPKQDSIITLVDEKDEEFDTKYLAYKKGLS
GGWAGFALCHGMQDGDSAVFQLIKPTTFKVLLCFQRILNNAELKARFFPLSLSLSLSLSLSLSLSLSLECSVLIQQCIRL
PGVYHPSSF
MKARLEATRKAEELESELDHEIPSFVKAMLHSHVVRGFWLQLPSHFCDTYMPKQDSIITLVDEKDEEFDTKYLAYKKGLS
GGWAGFALCHGMQDGDSAVFQLIKPTTFKVLLCFQRILNNAELKARFFPLSLSLSLSLSLSLSLSLSLECSVLIQQCIRL
PGVYHPSSF
MKARLEATRKAEELESELDHEIPSFVKAMLHSHVVRGFWLQLPSHFCDTYMPKQDSIITLVDEKDEEFDTKYLAYKKGLS
GGWAGFALCHGMQDGDSAVFQLIKPTTFKVLLCFQRILNNAELKARFFPLSLSLSLSLSLSLSLSLSLECSVLIQQCIRL
PGVYHPSSF
MKARLEATRKAEELESELDHEIPSFVKAMLHSHVVRGFWLQLPSHFCDTYMPKQDSIITLVDEKDEEFDTKYLAYKKGLS
GGWAGFALCHGMQDGDSAVFQLIKPTTFKVLLCFQRILNNAELKARFFPLSLSLSLSLSLSLSLSLSLECSVLIQQCIRL
PGVYHPSSF
MKARLEATRKAEELESELDHEIPSFVKAMLHSHVVRGFWLQLPSHFCDTYMPKQDSIITLVDEKDEEFDTKYLAYKKGLS
GGWAGFALCHGMQDGDSAVFQLIKPTTFKVLLCFQRILNNAELKARFFPLSLSLSLSLSLSLSLSLSLECSVLIQQCIRL
PGVYHPSSF
Secondary Structure Color Code | |
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BEND | region with high backbone curvature without specific hydrogen bonding |
HELX_LH_PP_P | left-handed polyproline helix |
HELX_RH_3T_P | right-handed 3-10 helix |
HELX_RH_AL_P | right-handed alpha helix |
HELX_RH_PI_P | right-handed pi helix |
STRN | beta strand |
TURN_TY1_P | type I turn |
UNDETERMINED | no data available |
Domains Present | |
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PF02362 |
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Hover here to show all domains |
CATGAAAGCTAGGTTGGAGGCAACA...
CATGAAAGCTAGGTTGGAGGCAACAAGAAAGGCCGAGGAGCTAGAATCAGAACTTGATCATGAAATCCCATCCTTTGTGAAGGCAATGTTGCATTCACATGTGGTTCGAGGTTTCTGGCTGCAACTCCCCAGCCATTTCTGTGACACTTACATGCCAAAGCAAGACTCCATTATCACCTTGGTGGATGAGAAGGATGAAGAATTCGACACCAAATACCTTGCCTACAAGAAGGGGCTAAGCGGCGGATGGGCTGGTTTTGCACTATGCCATGGGATGCAGGATGGAGATTCAGCTGTTTTTCAGTTGATTAAGCCCACGACCTTCAAGGTACTACTATGCTTTCAGCGAATACTGAATAACGCGGAGCTCAAAGCACGCTTTTTTCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTAGAATGTTCAGTGCTCATCCAACAATGCATTCGTCTTCCAGGTGTATATCATCCGAGCAGCTTCTGATGATGTCAGT
MVAAAAETQWMSPYEVARERNVEENKRKMEALNLRHLSAVIKEAPKTPSPMKPKRRRPIEDAVVVPSPPRRSRRLANLPE
LKYAEIAPHTADRMTRSPRKPACRIYFANRGSISMKARLEATRKAEELESELDHEIPSFVKAMLHSHVVRGFWLQLPSHF
CDTYMPKQDSIITLVDEKDEEFDTKYLAYKKGLSGGWAGFALCHGMQDGDSAVFQLIKPTTFKVYIIRAASDDVSEVDE
GCGAGGGAGATGGTGGCGGCGGCCG...
GCGAGGGAGATGGTGGCGGCGGCCGCGGAGACGCAGTGGATGTCGCCGTACGAGGTGGCGCGGGAGCGGAATGTGGAGGAGAACAAGCGCAAGATGGAGGCGCTCAACCTGCGCCACCTCTCCGCCGTCATCAAGGAGGCTCCCAAGACCCCTTCTCCCATGAAGCCGAAGAGGCGCAGGCCCATCGAGGACGCGGTCGTGGTTCCCTCGCCTCCCAGGAGGTCCCGCCGGCTTGCGAATCTCCCTGAGCTCAAGTATGCAGAGATAGCACCCCACACTGCAGATCGAATGACCAGGTCTCCTAGAAAACCAGCTTGCCGTATCTACTTCGCAAACCGCGGATCAATTTCCATGAAAGCTAGGTTGGAGGCAACAAGAAAGGCCGAGGAGCTAGAATCAGAACTTGATCATGAAATCCCATCCTTTGTGAAGGCAATGTTGCATTCACATGTGGTTCGAGGTTTCTGGCTGCAACTCCCCAGCCATTTCTGTGACACTTACATGCCAAAGCAAGACTCCATTATCACCTTGGTGGATGAGAAGGATGAAGAATTCGACACCAAATACCTTGCCTACAAGAAGGGGCTAAGCGGCGGATGGGCTGGTTTTGCACTATGCCATGGGATGCAGGATGGAGATTCAGCTGTTTTTCAGTTGATTAAGCCCACGACCTTCAAGGTGTATATCATCCGAGCAGCTTCTGATGATGTCAGTGAGGTAGATGAGTGA
MVAAAAETQWMSPYEVARERNVEENKRKMEALNLRHLSAVIKEAPKTPSPMKPKRRRPIEDAVVVPSPPRRSRRLANLPE
LKYAEIAPHTADRMTRSPRKPACRIYFANRGSISMKARLEATRKAEELESELDHEIPSFVKAMLHSHVVRGFWLQLPSHF
CDTYMPKQDSIITLVDEKDEEFDTKYLAYKKGLSGGWAGFALCHGMQDGDSAVFQLIKPTTFKVYIIRAASDDVSEVDE
CTCCCATTAAACCCTCCCCAACCTC...
CTCCCATTAAACCCTCCCCAACCTCGCGCCTGCCGCCCTCAAGTCCACCTCTCTCTCTCCTCTCCGCGTACGCCCCCGCACACCTCACCCCACACACTTCACTGAAGAGGTTGGGTGGGGCTGTGGGAGGGCGAGGGAGATGGTGGCGGCGGCCGCGGAGACGCAGTGGATGTCGCCGTACGAGGTGGCGCGGGAGCGGAATGTGGAGGAGAACAAGCGCAAGATGGAGGCGCTCAACCTGCGCCACCTCTCCGCCGTCATCAAGGAGGCTCCCAAGACCCCTTCTCCCATGAAGCCGAAGAGGCGCAGGCCCATCGAGGACGCGGTCGTGGTTCCCTCGCCTCCCAGGAGGTCCCGCCGGCTTGCGAATCTCCCTGAGCTCAAGTATGCAGAGATAGCACCCCACACTGCAGATCGAATGACCAGGTCTCCTAGAAAACCAGCTTGCCGTATCTACTTCGCAAACCGCGGATCAATTTCCATGAAAGCTAGGTTGGAGGCAACAAGAAAGGCCGAGGAGCTAGAATCAGAACTTGATCATGAAATCCCATCCTTTGTGAAGGCAATGTTGCATTCACATGTGGTTCGAGGTTTCTGGCTGCAACTCCCCAGCCATTTCTGTGACACTTACATGCCAAAGCAAGACTCCATTATCACCTTGGTGGATGAGAAGGATGAAGAATTCGACACCAAATACCTTGCCTACAAGAAGGGGCTAAGCGGCGGATGGGCTGGTTTTGCACTATGCCATGGGATGCAGGATGGAGATTCAGCTGTTTTTCAGTTGATTAAGCCCACGACCTTCAAGGTGTATATCATCCGAGCAGCTTCTGATGATGTCAGTGAGGTAGATGAGTGACTGCATCACGCGACGGCTGTACTGAGTACTAACTTAG
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